Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02759.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 865

Length: 1443
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32


Found at i:617 original size:26 final size:25

Alignment explanation


    Indices: 565--617  Score: 63
    Period size: 26  Copynumber: 2.0  Consensus size: 25

        555 TTTACAGTTT

                                      
        565 TACCCCTAGTAGGTAAATTACCGAAA
          1 TACCCCTAG-AGGTAAATTACCGAAA

                                   *   
        591 TACCCCTAG-GGTTAAATTGACCTAAA
          1 TACCCCTAGAGG-TAAATT-ACCGAAA

             
        617 T
          1 T

        618 GCATGTTTGA


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  24    2  0.08
  25    6  0.25
  26   16  0.67

ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26


Consensus pattern (25 bp):   
TACCCCTAGAGGTAAATTACCGAAA

Found at i:1110 original size:136 final size:137

Alignment explanation


    Indices: 865--1150  Score: 511
    Period size: 136  Copynumber: 2.1  Consensus size: 137

        855 GAGTAGTCTC

                                      *                                      
        865 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTCATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                *          * 
        930 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTGGCCCAGTATC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
        995 ACTGTTA
        131 ACTGTTA

                                    *                                        
       1002 CCCAAATGGGCTTGCATATG-TTATTCATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATGTTTACTCATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                                             
       1066 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
         66 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC

                   
       1131 ACTGTTA
        131 ACTGTTA

              **         
       1138 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1151 AGGCCCAATG


Statistics
Matches: 143,  Mismatches: 6, Indels: 1
        0.95            0.04        0.01

Matches are distributed among these distances:
 136  123  0.86
 137   20  0.14

ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32


Consensus pattern (137 bp):   
CCCAAATGGGCTTGCATATGTTTACTCATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACC
ACTGTTA
Done.