Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02792.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2027
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.39


Found at i:318 original size:10 final size:9

Alignment explanation


    Indices: 296--329  Score: 52
    Period size: 9  Copynumber: 3.8  Consensus size: 9

        286 GAGGAACTTG

                     
        296 ACTGTGTTA
          1 ACTGTGTTA

                      
        305 ACTGTGTCTA
          1 ACTGTGT-TA

                     
        315 ACTGTGTTA
          1 ACTGTGTTA

                   
        324 A-TGTGT
          1 ACTGTGT

        330 GTAAAGTTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
   8    5  0.21
   9   10  0.42
  10    9  0.38

ACGTcount: A:0.21, C:0.12, G:0.24, T:0.44


Consensus pattern (9 bp):   
ACTGTGTTA
Done.