Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02828.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3930
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.27


Found at i:1993 original size:12 final size:12

Alignment explanation


    Indices: 1976--2001  Score: 52
    Period size: 12  Copynumber: 2.2  Consensus size: 12

       1966 GCTTCGGTGG

                        
       1976 AGAAAAAGAAGA
          1 AGAAAAAGAAGA

                        
       1988 AGAAAAAGAAGA
          1 AGAAAAAGAAGA

              
       2000 AG
          1 AG

       2002 GAGACTGGTT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   14  1.00

ACGTcount: A:0.73, C:0.00, G:0.27, T:0.00


Consensus pattern (12 bp):   
AGAAAAAGAAGA
Done.