Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02838.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 348

Length: 580
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.28


Found at i:515 original size:39 final size:39

Alignment explanation


    Indices: 461--553  Score: 159
    Period size: 39  Copynumber: 2.4  Consensus size: 39

        451 GTGAGAAATG

                                                   
        461 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA
          1 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA

                                                   
        500 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA
          1 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA

             *     *       
        539 TCAGTTGAGAAAAAT
          1 TAAGTT-TGAAAAAT

        554 TACTAATTTT


Statistics
Matches: 51,  Mismatches: 2, Indels: 1
        0.94            0.04        0.02

Matches are distributed among these distances:
  39   44  0.86
  40    7  0.14

ACGTcount: A:0.38, C:0.05, G:0.20, T:0.37


Consensus pattern (39 bp):   
TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA
Done.