Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02838.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 322

Length: 537
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27


Found at i:515 original size:39 final size:39

Alignment explanation


    Indices: 461--537  Score: 154
    Period size: 39  Copynumber: 2.0  Consensus size: 39

        451 GTGAGAAATG

                                                   
        461 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA
          1 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA

                                                  
        500 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGT
          1 TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.35, C:0.05, G:0.21, T:0.39


Consensus pattern (39 bp):   
TAAGTTTGAAAAATGAGCAAAATGTTGGATTTCTTTGTA
Done.