Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02850.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1742
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35


Found at i:425 original size:15 final size:15

Alignment explanation


    Indices: 405--436  Score: 64
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        395 GGCTCGGATG

                           
        405 TAAGGTAGGTGCTCT
          1 TAAGGTAGGTGCTCT

                           
        420 TAAGGTAGGTGCTCT
          1 TAAGGTAGGTGCTCT

              
        435 TA
          1 TA

        437 GGGTCTTCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.22, C:0.12, G:0.31, T:0.34


Consensus pattern (15 bp):   
TAAGGTAGGTGCTCT
Done.