Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02860.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2161
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30


Found at i:1945 original size:31 final size:31

Alignment explanation


    Indices: 1909--1969  Score: 122
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       1899 TCTTTAGGTT

                                           
       1909 GATGGATGAATTTTATTCACTCATTTACTTG
          1 GATGGATGAATTTTATTCACTCATTTACTTG

                                          
       1940 GATGGATGAATTTTATTCACTCATTTACTT
          1 GATGGATGAATTTTATTCACTCATTTACTT

       1970 AGGAATGTGA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46


Consensus pattern (31 bp):   
GATGGATGAATTTTATTCACTCATTTACTTG
Done.