Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02866.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 783

Length: 1305
ACGTcount: A:0.27, C:0.19, G:0.22, T:0.31


Found at i:80 original size:15 final size:15

Alignment explanation


    Indices: 60--89  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

         50 TGTCCGCAGA

                           
         60 GAGAGAGAGAGAAAG
          1 GAGAGAGAGAGAAAG

                           
         75 GAGAGAGAGAGAAAG
          1 GAGAGAGAGAGAAAG

         90 CTAATAATGG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00


Consensus pattern (15 bp):   
GAGAGAGAGAGAAAG

Found at i:145 original size:18 final size:18

Alignment explanation


    Indices: 107--145  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 18

         97 TGGGCAGCAC

                           *  
        107 TTCTTTATCTCCCTCTAT
          1 TTCTTTATCTCCCTCCAT

                  *         * 
        125 TTCTTTGTCTCCCTCCCT
          1 TTCTTTATCTCCCTCCAT

               
        143 TTC
          1 TTC

        146 CCCTCATTCT


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.05, C:0.38, G:0.03, T:0.54


Consensus pattern (18 bp):   
TTCTTTATCTCCCTCCAT
Done.