Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02869.C2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4497
ACGTcount: A:0.28, C:0.24, G:0.12, T:0.36


Found at i:1576 original size:16 final size:16

Alignment explanation


    Indices: 1555--1589  Score: 70
    Period size: 16  Copynumber: 2.2  Consensus size: 16

       1545 ATGAATTTCC

                            
       1555 TTCCTTGTTTTTGAAT
          1 TTCCTTGTTTTTGAAT

                            
       1571 TTCCTTGTTTTTGAAT
          1 TTCCTTGTTTTTGAAT

               
       1587 TTC
          1 TTC

       1590 TCCACCAAAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   19  1.00

ACGTcount: A:0.11, C:0.14, G:0.11, T:0.63


Consensus pattern (16 bp):   
TTCCTTGTTTTTGAAT
Done.