Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01216.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 852

Length: 1421
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.30


Found at i:1332 original size:17 final size:17

Alignment explanation


    Indices: 1310--1344  Score: 61
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       1300 TTGTCTGTGA

                      *      
       1310 TTTGATGTGTTGTATCT
          1 TTTGATGTGTCGTATCT

                             
       1327 TTTGATGTGTCGTATCT
          1 TTTGATGTGTCGTATCT

             
       1344 T
          1 T

       1345 ACTTATTCTC


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.11, C:0.09, G:0.23, T:0.57


Consensus pattern (17 bp):   
TTTGATGTGTCGTATCT
Done.