Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02895.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1943
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33


Found at i:1876 original size:86 final size:86

Alignment explanation


    Indices: 1731--1888  Score: 271
    Period size: 86  Copynumber: 1.8  Consensus size: 86

       1721 ATAAGCCCAA

                       *              *                                      
       1731 CTAGTTAGAAGTAGATCCTCTAAGTTTATTTTAGTTTCCTACTATTCACAAGAACAGTCCTTTGT
          1 CTAGTTAGAAGCAGATCCTCTAAGTTCATTTTAGTTTCCTACTATTCACAAGAACAGTCCTTTGT

                                 
       1796 AACATGAGATGATCAAAAAAG
         66 AACATGAGATGATCAAAAAAG

                                       *          *                          
       1817 CTAGTTAGAAGCAGATCCTCTAAGTTCGTTTTAGTTTCTTACTATTCACAAGAACAGTCCTTTGT
          1 CTAGTTAGAAGCAGATCCTCTAAGTTCATTTTAGTTTCCTACTATTCACAAGAACAGTCCTTTGT

              *    
       1882 AATATGA
         66 AACATGA

       1889 TATATCCATC


Statistics
Matches: 67,  Mismatches: 5, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  86   67  1.00

ACGTcount: A:0.32, C:0.17, G:0.15, T:0.35


Consensus pattern (86 bp):   
CTAGTTAGAAGCAGATCCTCTAAGTTCATTTTAGTTTCCTACTATTCACAAGAACAGTCCTTTGT
AACATGAGATGATCAAAAAAG
Done.