Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02898.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1677
ACGTcount: A:0.27, C:0.16, G:0.16, T:0.41


Found at i:139 original size:25 final size:25

Alignment explanation


    Indices: 111--160  Score: 73
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        101 CAGGTAAGGC

                                     
        111 TCTTTCTCCGTCTTCCGTTCTTCAT
          1 TCTTTCTCCGTCTTCCGTTCTTCAT

                 *   *     *         
        136 TCTTTTTCCTTCTTCTGTTCTTCAT
          1 TCTTTCTCCGTCTTCCGTTCTTCAT

        161 CTTCTCTTAC


Statistics
Matches: 22,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  25   22  1.00

ACGTcount: A:0.04, C:0.32, G:0.06, T:0.58


Consensus pattern (25 bp):   
TCTTTCTCCGTCTTCCGTTCTTCAT
Done.