Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02904.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2034
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Found at i:1321 original size:22 final size:22

Alignment explanation


    Indices: 1296--1350  Score: 76
    Period size: 22  Copynumber: 2.5  Consensus size: 22

       1286 GACTTCTACT

                                   
       1296 TAGCCCTCTGCATCGCCT-TCAG
          1 TAGCCCTCTGCATCG-CTGTCAG

                               ** 
       1318 TAGCCCTCTGCATCGCTGTTTG
          1 TAGCCCTCTGCATCGCTGTCAG

                       
       1340 TAGCCCTCTGC
          1 TAGCCCTCTGC

       1351 TGCATCTCTA


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  21    2  0.07
  22   28  0.93

ACGTcount: A:0.11, C:0.38, G:0.20, T:0.31


Consensus pattern (22 bp):   
TAGCCCTCTGCATCGCTGTCAG
Done.