Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02911.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 521

Length: 869
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28


Found at i:476 original size:20 final size:21

Alignment explanation


    Indices: 448--486  Score: 53
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        438 GTGCATGGGT

                *                
        448 GCAATTTC-AGCTTTACAACA
          1 GCAAGTTCAAGCTTTACAACA

                      *        
        468 GCAAGTTCAATCTTTACAA
          1 GCAAGTTCAAGCTTTACAA

        487 GCTGAACTGA


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20    7  0.44
  21    9  0.56

ACGTcount: A:0.36, C:0.23, G:0.10, T:0.31


Consensus pattern (21 bp):   
GCAAGTTCAAGCTTTACAACA
Done.