Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02913.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3684
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36


Found at i:2858 original size:17 final size:17

Alignment explanation


    Indices: 2833--2866  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       2823 CCAAAAAAAA

                             
       2833 AAAAAATTATTGCATTT
          1 AAAAAATTATTGCATTT

                *      *     
       2850 AAAATATTATTTCATTT
          1 AAAAAATTATTGCATTT

       2867 TGACTAATGG


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.44, C:0.06, G:0.03, T:0.47


Consensus pattern (17 bp):   
AAAAAATTATTGCATTT
Done.