Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02919.M1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1702
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35


Found at i:1446 original size:3 final size:3

Alignment explanation


    Indices: 1431--1466  Score: 54
    Period size: 3  Copynumber: 12.0  Consensus size: 3

       1421 AAGAGGACAT

                    *                 *                    
       1431 TGA TGA CGA TGA TGA TGA TGG TGA TGA TGA TGA TGA
          1 TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA TGA

       1467 ATACGATGAG


Statistics
Matches: 29,  Mismatches: 4, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
   3   29  1.00

ACGTcount: A:0.31, C:0.03, G:0.36, T:0.31


Consensus pattern (3 bp):   
TGA

Done.