Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02927.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3059
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:1407 original size:54 final size:54

Alignment explanation


    Indices: 1325--1434  Score: 220
    Period size: 54  Copynumber: 2.0  Consensus size: 54

       1315 CAAGTTAGGA

                                                                  
       1325 CATAGAATACTTATGTACAAGCATGCTTAAGGGTGCAAAAGACAGGGTTGAGCG
          1 CATAGAATACTTATGTACAAGCATGCTTAAGGGTGCAAAAGACAGGGTTGAGCG

                                                                  
       1379 CATAGAATACTTATGTACAAGCATGCTTAAGGGTGCAAAAGACAGGGTTGAGCG
          1 CATAGAATACTTATGTACAAGCATGCTTAAGGGTGCAAAAGACAGGGTTGAGCG

              
       1433 CA
          1 CA

       1435 CCAAGTGTGT


Statistics
Matches: 56,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  54   56  1.00

ACGTcount: A:0.35, C:0.15, G:0.27, T:0.22


Consensus pattern (54 bp):   
CATAGAATACTTATGTACAAGCATGCTTAAGGGTGCAAAAGACAGGGTTGAGCG
Done.