Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02934.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 505

Length: 843
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:260 original size:51 final size:51

Alignment explanation


    Indices: 205--335  Score: 178
    Period size: 51  Copynumber: 2.6  Consensus size: 51

        195 GCCTCAAAAC

                                        *        * *           
        205 AAACCACAACCACCCCCATCAGTGGCTACACCGAATCTTTCCTCTGAACCA
          1 AAACCACAACCACCCCCATCAGTGGCTAAACCGAATCCTCCCTCTGAACCA

                        *                  *                *  
        256 AAACCACAACCATCCCCATCAGTGGCTAAACTGAATCCTCCCTCTGAATCA
          1 AAACCACAACCACCCCCATCAGTGGCTAAACCGAATCCTCCCTCTGAACCA

                              *             
        307 AAACCAC-A--ACCCCCACCAGTGGCTAAACC
          1 AAACCACAACCACCCCCATCAGTGGCTAAACC

        336 AAGCTCTCCA


Statistics
Matches: 71,  Mismatches: 9, Indels: 3
        0.86            0.11        0.04

Matches are distributed among these distances:
  48   18  0.25
  50    1  0.01
  51   52  0.73

ACGTcount: A:0.34, C:0.40, G:0.10, T:0.16


Consensus pattern (51 bp):   
AAACCACAACCACCCCCATCAGTGGCTAAACCGAATCCTCCCTCTGAACCA

Done.