Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02936.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2148
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.35


Found at i:622 original size:27 final size:27

Alignment explanation


    Indices: 585--645  Score: 97
    Period size: 27  Copynumber: 2.3  Consensus size: 27

        575 TAGTAAAGTT

                        *              
        585 GTTG-ATGCATTCGGTGGGTTTAATAA
          1 GTTGTATGCATTAGGTGGGTTTAATAA

                                      *
        611 GTTGTATGCATTAGGTGGGTTTAATAT
          1 GTTGTATGCATTAGGTGGGTTTAATAA

                    
        638 GTTGTATG
          1 GTTGTATG

        646 TCAGTAGGAA


Statistics
Matches: 32,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  26    4  0.12
  27   28  0.88

ACGTcount: A:0.21, C:0.05, G:0.31, T:0.43


Consensus pattern (27 bp):   
GTTGTATGCATTAGGTGGGTTTAATAA
Done.