Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02949.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2603
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:729 original size:16 final size:16

Alignment explanation


    Indices: 710--740  Score: 62
    Period size: 16  Copynumber: 1.9  Consensus size: 16

        700 GAAGAAATTC

                            
        710 AGAAGAATAGAAGTTT
          1 AGAAGAATAGAAGTTT

                           
        726 AGAAGAATAGAAGTT
          1 AGAAGAATAGAAGTT

        741 AGGGTTGAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.52, C:0.00, G:0.26, T:0.23


Consensus pattern (16 bp):   
AGAAGAATAGAAGTTT

Found at i:2256 original size:25 final size:25

Alignment explanation


    Indices: 2222--2271  Score: 91
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       2212 TGACAAGTCG

                        *            
       2222 GATCAAGGTATTGTCGGGAGCTGTA
          1 GATCAAGGTATTATCGGGAGCTGTA

                                     
       2247 GATCAAGGTATTATCGGGAGCTGTA
          1 GATCAAGGTATTATCGGGAGCTGTA

       2272 CGGGTACACC


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   24  1.00

ACGTcount: A:0.26, C:0.12, G:0.34, T:0.28


Consensus pattern (25 bp):   
GATCAAGGTATTATCGGGAGCTGTA
Done.