Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02967.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 999

Length: 1666
ACGTcount: A:0.30, C:0.18, G:0.20, T:0.32


Found at i:1440 original size:35 final size:35

Alignment explanation


    Indices: 1394--1463  Score: 140
    Period size: 35  Copynumber: 2.0  Consensus size: 35

       1384 ACCATGCCAA

                                               
       1394 TGCCTGAATCCCCCATTAAACACAACAGTGACCAT
          1 TGCCTGAATCCCCCATTAAACACAACAGTGACCAT

                                               
       1429 TGCCTGAATCCCCCATTAAACACAACAGTGACCAT
          1 TGCCTGAATCCCCCATTAAACACAACAGTGACCAT

       1464 AAATAATTCA


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  35   35  1.00

ACGTcount: A:0.34, C:0.34, G:0.11, T:0.20


Consensus pattern (35 bp):   
TGCCTGAATCCCCCATTAAACACAACAGTGACCAT
Done.