Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02974.N5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.34


Found at i:413 original size:12 final size:12

Alignment explanation


    Indices: 396--420  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

        386 CAGAGGCTAT

                        
        396 TAACAATATTTA
          1 TAACAATATTTA

                        
        408 TAACAATATTTA
          1 TAACAATATTTA

             
        420 T
          1 T

        421 GTTATAAAAT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.48, C:0.08, G:0.00, T:0.44


Consensus pattern (12 bp):   
TAACAATATTTA
Done.