Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02976.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 366

Length: 610
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33


Found at i:351 original size:19 final size:19

Alignment explanation


    Indices: 316--354  Score: 53
    Period size: 19  Copynumber: 2.1  Consensus size: 19

        306 CGTGGAGAAA

                        *      
        316 CCGTTCGTGGGCGTGGAGG
          1 CCGTTCGTGGGCATGGAGG

                                
        335 CCGTT-GTGGAGCATGGAGG
          1 CCGTTCGTGG-GCATGGAGG

             
        354 C
          1 C

        355 TGGGCAGAAG


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  18    4  0.22
  19   14  0.78

ACGTcount: A:0.10, C:0.21, G:0.49, T:0.21


Consensus pattern (19 bp):   
CCGTTCGTGGGCATGGAGG
Done.