Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02977.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 887

Length: 1479
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26


Found at i:1309 original size:104 final size:104

Alignment explanation


    Indices: 1175--1383  Score: 391
    Period size: 104  Copynumber: 2.0  Consensus size: 104

       1165 ACCAGCTGCT

                                                                             
       1175 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC
          1 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC

                                   *  *            
       1240 ATCGTCCGGAGGCTGTCATTGTTTCATACACCGTTGATG
         66 ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG

                                                               *             
       1279 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCGCAATCTGCAATGC
          1 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC

                                                   
       1344 ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG
         66 ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG

             
       1383 G
          1 G

       1384 CTGATTCCAA


Statistics
Matches: 102,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 104  102  1.00

ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28


Consensus pattern (104 bp):   
GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC
ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG
Done.