Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02977.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 956

Length: 1594
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.27


Found at i:1424 original size:104 final size:104

Alignment explanation


    Indices: 1290--1498  Score: 391
    Period size: 104  Copynumber: 2.0  Consensus size: 104

       1280 ACCAGCTGCT

                                                                             
       1290 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC
          1 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC

                                   *  *            
       1355 ATCGTCCGGAGGCTGTCATTGTTTCATACACCGTTGATG
         66 ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG

                                                               *             
       1394 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCGCAATCTGCAATGC
          1 GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC

                                                   
       1459 ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG
         66 ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG

             
       1498 G
          1 G

       1499 CTGATTCCAA


Statistics
Matches: 102,  Mismatches: 3, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
 104  102  1.00

ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28


Consensus pattern (104 bp):   
GGCTTCTGTTTCTAAGTTACAGTTGAGGCATAAGTTAAAAAACCGAGCACCACAATCTGCAATGC
ATCGTCCGGAGGCTGTCATTGTTCCAGACACCGTTGATG
Done.