Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02992.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2289
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34


Found at i:1085 original size:129 final size:129

Alignment explanation


    Indices: 855--1112  Score: 489
    Period size: 129  Copynumber: 2.0  Consensus size: 129

        845 CTTCAGCCGG

                                                                             
        855 TGCTGAATTAGATGAAGGAATCTACATTTTAATCATATATACTATAGAATAGTCATGGATCTGAC
          1 TGCTGAATTAGATGAAGGAATCTACATTTTAATCATATATACTATAGAATAGTCATGGATCTGAC

                                                           *                
        920 ATACTCCCATATATCTAACTGCACAAATAAAGGGCAGCCTATAGTCAGTTCTATAGTAGGGATC
         66 ATACTCCCATATATCTAACTGCACAAATAAAGGGCAGCCTATAGTCACTTCTATAGTAGGGATC

                                                           *                 
        984 TGCTGAATTAGATGAAGGAATCTACATTTTAATCATATATACTATAGGATAGTCATGGATCTGAC
          1 TGCTGAATTAGATGAAGGAATCTACATTTTAATCATATATACTATAGAATAGTCATGGATCTGAC

                             *                                              
       1049 ATACTCCCATATATCTAGCTGCACAAATAAAGGGCAGCCTATAGTCACTTCTATAGTAGGGATC
         66 ATACTCCCATATATCTAACTGCACAAATAAAGGGCAGCCTATAGTCACTTCTATAGTAGGGATC

       1113 AGCTAGCCAT


Statistics
Matches: 126,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 129  126  1.00

ACGTcount: A:0.35, C:0.17, G:0.17, T:0.30


Consensus pattern (129 bp):   
TGCTGAATTAGATGAAGGAATCTACATTTTAATCATATATACTATAGAATAGTCATGGATCTGAC
ATACTCCCATATATCTAACTGCACAAATAAAGGGCAGCCTATAGTCACTTCTATAGTAGGGATC
Done.