Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02995.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 606

Length: 1011
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.26


Found at i:56 original size:6 final size:6

Alignment explanation


    Indices: 45--96  Score: 59
    Period size: 6  Copynumber: 8.3  Consensus size: 6

         35 ATCTCCAATT

                                    *                     *      *   
         45 TCAAAA TCAAAA TCAAAA TCAGAA TCAAAA TCCAAAGA TCTAAA TCTAAA
          1 TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA T-CAAA-A TCAAAA TCAAAA

              
         95 TC
          1 TC

         97 CGTCTCCTCT


Statistics
Matches: 41,  Mismatches: 3, Indels: 4
        0.85            0.06        0.08

Matches are distributed among these distances:
   6   32  0.78
   7    7  0.17
   8    2  0.05

ACGTcount: A:0.56, C:0.19, G:0.04, T:0.21


Consensus pattern (6 bp):   
TCAAAA

Done.