Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g02998.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 701

Length: 1169
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28


Found at i:989 original size:37 final size:37

Alignment explanation


    Indices: 939--1013  Score: 150
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        929 TGATGTAAAC

                                                 
        939 TCAGGCATACAAGTTTGTGTTTGCTTTCATTTAGACA
          1 TCAGGCATACAAGTTTGTGTTTGCTTTCATTTAGACA

                                                 
        976 TCAGGCATACAAGTTTGTGTTTGCTTTCATTTAGACA
          1 TCAGGCATACAAGTTTGTGTTTGCTTTCATTTAGACA

             
       1013 T
          1 T

       1014 TCATATTCCT


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  37   38  1.00

ACGTcount: A:0.24, C:0.16, G:0.19, T:0.41


Consensus pattern (37 bp):   
TCAGGCATACAAGTTTGTGTTTGCTTTCATTTAGACA
Done.