Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01221.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3906
ACGTcount: A:0.34, C:0.20, G:0.14, T:0.32


Found at i:1911 original size:25 final size:25

Alignment explanation


    Indices: 1877--1925  Score: 89
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       1867 AGACTCGCAC

                                     
       1877 TTGGCAGATTTATTTTTGCAAACTA
          1 TTGGCAGATTTATTTTTGCAAACTA

                 *                  
       1902 TTGGCGGATTTATTTTTGCAAACT
          1 TTGGCAGATTTATTTTTGCAAACT

       1926 TTCATATAGC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   23  1.00

ACGTcount: A:0.24, C:0.12, G:0.18, T:0.45


Consensus pattern (25 bp):   
TTGGCAGATTTATTTTTGCAAACTA
Done.