Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03007.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4720
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:351 original size:14 final size:14

Alignment explanation


    Indices: 310--351  Score: 59
    Period size: 14  Copynumber: 3.1  Consensus size: 14

        300 TTTCAATTTG

                          
        310 ATTTT-TTTTTTAA
          1 ATTTTATTTTTTAA

                    * *   
        323 ATTTTATTATATAA
          1 ATTTTATTTTTTAA

                          
        337 ATTTTATTTTTTAA
          1 ATTTTATTTTTTAA

             
        351 A
          1 A

        352 AAAAAATTCA


Statistics
Matches: 24,  Mismatches: 4, Indels: 1
        0.83            0.14        0.03

Matches are distributed among these distances:
  13    5  0.21
  14   19  0.79

ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67


Consensus pattern (14 bp):   
ATTTTATTTTTTAA

Found at i:965 original size:22 final size:22

Alignment explanation


    Indices: 937--980  Score: 61
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        927 ATTAGTGAAT

                          *       
        937 CAAATATATAAATATAAATAAA
          1 CAAATATATAAATAAAAATAAA

                   *  *           
        959 CAAATATTTATATAAAAATAAA
          1 CAAATATATAAATAAAAATAAA

        981 ATATAAATAG


Statistics
Matches: 19,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  22   19  1.00

ACGTcount: A:0.66, C:0.05, G:0.00, T:0.30


Consensus pattern (22 bp):   
CAAATATATAAATAAAAATAAA
Done.