Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga05g03012.F3
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5234
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35
Found at i:2226 original size:18 final size:18
Alignment explanation
Indices: 2189--2226 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
2179 GGATACTTCT
**
2189 AGAAAAATGAATAGTTGG
1 AGAAAAATGAATAGCCGG
2207 AGAAAAATGAATAGCCGG
1 AGAAAAATGAATAGCCGG
2225 AG
1 AG
2227 CAACAAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.50, C:0.05, G:0.29, T:0.16
Consensus pattern (18 bp):
AGAAAAATGAATAGCCGG
Found at i:4533 original size:99 final size:99
Alignment explanation
Indices: 4362--4544 Score: 366
Period size: 99 Copynumber: 1.8 Consensus size: 99
4352 ACTTTTTACT
4362 TATTTTCTTCAGTTAGATTGCTTGAGGCATCTTTTTAGAGCCGAGCTAATGAAAATGTCAAATTG
1 TATTTTCTTCAGTTAGATTGCTTGAGGCATCTTTTTAGAGCCGAGCTAATGAAAATGTCAAATTG
4427 CTACGTGTGGCAGGTGCACAGATTGCTTGAGGCA
66 CTACGTGTGGCAGGTGCACAGATTGCTTGAGGCA
4461 TATTTTCTTCAGTTAGATTGCTTGAGGCATCTTTTTAGAGCCGAGCTAATGAAAATGTCAAATTG
1 TATTTTCTTCAGTTAGATTGCTTGAGGCATCTTTTTAGAGCCGAGCTAATGAAAATGTCAAATTG
4526 CTACGTGTGGCAGGTGCAC
66 CTACGTGTGGCAGGTGCAC
4545 GGTTTGCCTT
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
99 84 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.34
Consensus pattern (99 bp):
TATTTTCTTCAGTTAGATTGCTTGAGGCATCTTTTTAGAGCCGAGCTAATGAAAATGTCAAATTG
CTACGTGTGGCAGGTGCACAGATTGCTTGAGGCA
Done.