Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03021.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2008
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.29


Found at i:518 original size:20 final size:21

Alignment explanation


    Indices: 474--519  Score: 76
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        464 TAATGATAAC

                                 
        474 AGCTTGTTCAACCAAATTAAA
          1 AGCTTGTTCAACCAAATTAAA

                    *            
        495 AGCTTGTTTAACCAAATT-AA
          1 AGCTTGTTCAACCAAATTAAA

                 
        515 AGCTT
          1 AGCTT

        520 TCCTAGGAAG


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  20    7  0.29
  21   17  0.71

ACGTcount: A:0.39, C:0.17, G:0.11, T:0.33


Consensus pattern (21 bp):   
AGCTTGTTCAACCAAATTAAA
Done.