Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03047.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3301
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.32


Found at i:3090 original size:19 final size:19

Alignment explanation


    Indices: 3062--3099  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

       3052 CTCCAACTTG

                 *    *        
       3062 AGGGATGTTACGAGTAATT
          1 AGGGAAGTTAAGAGTAATT

                               
       3081 AGGGAAGTTAAGAGTAATT
          1 AGGGAAGTTAAGAGTAATT

       3100 TATGGGATTT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  19   17  1.00

ACGTcount: A:0.37, C:0.03, G:0.32, T:0.29


Consensus pattern (19 bp):   
AGGGAAGTTAAGAGTAATT
Done.