Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03055.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 972

Length: 1620
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25


Found at i:1051 original size:24 final size:24

Alignment explanation


    Indices: 1019--1068  Score: 100
    Period size: 24  Copynumber: 2.1  Consensus size: 24

       1009 CAAACCATGC

                                    
       1019 AAATGTTACCGAGAATTCAACTAG
          1 AAATGTTACCGAGAATTCAACTAG

                                    
       1043 AAATGTTACCGAGAATTCAACTAG
          1 AAATGTTACCGAGAATTCAACTAG

              
       1067 AA
          1 AA

       1069 TGACTCAAGA


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  24   26  1.00

ACGTcount: A:0.44, C:0.16, G:0.16, T:0.24


Consensus pattern (24 bp):   
AAATGTTACCGAGAATTCAACTAG

Found at i:1120 original size:14 final size:14

Alignment explanation


    Indices: 1101--1127  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       1091 GACGACAACA

                          
       1101 ACCACCACCACCAC
          1 ACCACCACCACCAC

                         
       1115 ACCACCACCACCA
          1 ACCACCACCACCA

       1128 TCATCCGCGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.37, C:0.63, G:0.00, T:0.00


Consensus pattern (14 bp):   
ACCACCACCACCAC
Done.