Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga01g01224.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3714
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.36
Found at i:929 original size:232 final size:232
Alignment explanation
Indices: 520--990 Score: 849
Period size: 232 Copynumber: 2.0 Consensus size: 232
510 AATACTCGGA
520 ACAATTTATAAGGATCTTTAATCTTTTATGTTGCAAAATATATTGTACTTTCGACCCTTTTCTAA
1 ACAATTTATAAGGATCTTTAATCTTTTATGTTGCAAAATATATTGTACTTTCGACCCTTTTCTAA
*
585 AAGGTAGTTTAGATGTTTCACATCATTGCCCTAAACTTTGTCGTTGATGAGATTGCAAATTCTTA
66 AAGGTAGTTTAGATGTTTCACATCATTGCCCTAAACTTTGTCATTGATGAGATTGCAAATTCTTA
* *
650 TAATCTTCTAAGACTAAGAAACGCCAATGAATTTGTTTGTCTTTGATT-CTACAGATGATTAGTT
131 TAATCTTCTAAAACTAAGAAACGCCAATGAATTTGTTTGTATTTGATTCCT-CAGATGATTAGTT
*
714 GTGAATATATGTATCTGGAATTGCCTTCCATTGAATGG
195 GTGAATATAAGTATCTGGAATTGCCTTCCATTGAATGG
752 ACAATTTATAAGGATCTTTAATCTTTTATGTTGCAAAATATATTGTACTTTCGACCCTTTTCTAA
1 ACAATTTATAAGGATCTTTAATCTTTTATGTTGCAAAATATATTGTACTTTCGACCCTTTTCTAA
* *
817 AAGGTAGTTTAGATGTTAT-ACATCATTTCCCTAAACTTTGTCATTGATGAGATTGCGAATTCTT
66 AAGGTAGTTTAGATGTT-TCACATCATTGCCCTAAACTTTGTCATTGATGAGATTGCAAATTCTT
881 ATAATCTTCTAAAACTAAGAAACGCCAATGAATTTGTTTGTATTTGATTCCTCAGATGATTAGTT
130 ATAATCTTCTAAAACTAAGAAACGCCAATGAATTTGTTTGTATTTGATTCCTCAGATGATTAGTT
946 GTGAATATAAGTATCTGGAATTGCCTTCCATTGAATGG
195 GTGAATATAAGTATCTGGAATTGCCTTCCATTGAATGG
984 AC-ATTTA
1 ACAATTTA
991 GCATGGATGG
Statistics
Matches: 231, Mismatches: 6, Indels: 5
0.95 0.02 0.02
Matches are distributed among these distances:
231 5 0.02
232 223 0.97
233 3 0.01
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.40
Consensus pattern (232 bp):
ACAATTTATAAGGATCTTTAATCTTTTATGTTGCAAAATATATTGTACTTTCGACCCTTTTCTAA
AAGGTAGTTTAGATGTTTCACATCATTGCCCTAAACTTTGTCATTGATGAGATTGCAAATTCTTA
TAATCTTCTAAAACTAAGAAACGCCAATGAATTTGTTTGTATTTGATTCCTCAGATGATTAGTTG
TGAATATAAGTATCTGGAATTGCCTTCCATTGAATGG
Done.