Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03092.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 323

Length: 539
ACGTcount: A:0.21, C:0.19, G:0.25, T:0.35


Found at i:230 original size:27 final size:26

Alignment explanation


    Indices: 126--240  Score: 140
    Period size: 27  Copynumber: 4.3  Consensus size: 26

        116 TGGAGGAAGC

                        *        *     
        126 GTTCTGGTGGCTATGCCACAAATATCT
          1 GTTCTGGTGGCTCTGCCAC-ATTATCT

             *                         
        153 GATCTGGTGGCTCTGCCACATATATCT
          1 GTTCTGGTGGCTCTGCCACAT-TATCT

                                       
        180 GTTCTGGTGGCTCTGCCACGATTATCT
          1 GTTCTGGTGGCTCTGCCAC-ATTATCT

                      *    **          
        207 GTATCTGGTGACTCTATCACATTATCT
          1 GT-TCTGGTGGCTCTGCCACATTATCT

                   
        234 GTTCTGG
          1 GTTCTGG

        241 CAGCCATGCT


Statistics
Matches: 78,  Mismatches: 7, Indels: 7
        0.85            0.08        0.08

Matches are distributed among these distances:
  26    6  0.08
  27   56  0.72
  28   16  0.21

ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37


Consensus pattern (26 bp):   
GTTCTGGTGGCTCTGCCACATTATCT

Found at i:233 original size:54 final size:54

Alignment explanation


    Indices: 126--240  Score: 160
    Period size: 54  Copynumber: 2.1  Consensus size: 54

        116 TGGAGGAAGC

                                                *    *            
        126 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCT
          1 GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT

                        *      * *                     *           
        180 GTTCTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TATCT
          1 GTTCTGGTGGCTATGCCACAAATATCTG-ATCTGGTGACTCTACCACATATATCT

                   
        234 GTTCTGG
          1 GTTCTGG

        241 CAGCCATGCT


Statistics
Matches: 54,  Mismatches: 6, Indels: 2
        0.87            0.10        0.03

Matches are distributed among these distances:
  54   37  0.69
  55   17  0.31

ACGTcount: A:0.17, C:0.23, G:0.23, T:0.37


Consensus pattern (54 bp):   
GTTCTGGTGGCTATGCCACAAATATCTGATCTGGTGACTCTACCACATATATCT
Done.