Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g00125.P2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2825
ACGTcount: A:0.33, C:0.15, G:0.18, T:0.34


Found at i:1894 original size:2 final size:2

Alignment explanation


    Indices: 1887--1924  Score: 67
    Period size: 2  Copynumber: 19.0  Consensus size: 2

       1877 CTCACTCAGG

                                                          *         
       1887 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

       1925 ATGCAATTAC


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
   2   34  1.00

ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50


Consensus pattern (2 bp):   
TA

Done.