Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03094.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 564

Length: 941
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34


Found at i:253 original size:32 final size:35

Alignment explanation


    Indices: 217--288  Score: 96
    Period size: 36  Copynumber: 2.1  Consensus size: 35

        207 GACTACTAAG

                                               
        217 GTAAAT-CCCTAC-T-TTTTATTTTAAAATTTCAT
          1 GTAAATCCCCTACTTCTTTTATTTTAAAATTTCAT

                       *         *              
        249 GTAAATCCCCTTCTTTCTTTTGTTTTAAAATTTCAT
          1 GTAAATCCCCTAC-TTCTTTTATTTTAAAATTTCAT

                
        285 GTAA
          1 GTAA

        289 TCCTAAAGAA


Statistics
Matches: 34,  Mismatches: 2, Indels: 4
        0.85            0.05        0.10

Matches are distributed among these distances:
  32    6  0.18
  33    5  0.15
  35    1  0.03
  36   22  0.65

ACGTcount: A:0.28, C:0.17, G:0.06, T:0.50


Consensus pattern (35 bp):   
GTAAATCCCCTACTTCTTTTATTTTAAAATTTCAT
Done.