Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03096.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2358
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.32


Found at i:1388 original size:39 final size:39

Alignment explanation


    Indices: 1343--1422  Score: 160
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       1333 GATTTCATGA

                                                   
       1343 TATGTCAGTTTTTATTATTTCTGATTGAGATAGATGGTT
          1 TATGTCAGTTTTTATTATTTCTGATTGAGATAGATGGTT

                                                   
       1382 TATGTCAGTTTTTATTATTTCTGATTGAGATAGATGGTT
          1 TATGTCAGTTTTTATTATTTCTGATTGAGATAGATGGTT

              
       1421 TA
          1 TA

       1423 CATTCTAATT


Statistics
Matches: 41,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   41  1.00

ACGTcount: A:0.24, C:0.05, G:0.20, T:0.51


Consensus pattern (39 bp):   
TATGTCAGTTTTTATTATTTCTGATTGAGATAGATGGTT
Done.