Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03098.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3934
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:2510 original size:30 final size:30

Alignment explanation


    Indices: 2476--2535  Score: 111
    Period size: 30  Copynumber: 2.0  Consensus size: 30

       2466 GAGATGGGGT

                        *                 
       2476 AAAGATGATGATGTTGATGGTGATTCAAGG
          1 AAAGATGATGATATTGATGGTGATTCAAGG

                                          
       2506 AAAGATGATGATATTGATGGTGATTCAAGG
          1 AAAGATGATGATATTGATGGTGATTCAAGG

       2536 CATGATAGGG


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   29  1.00

ACGTcount: A:0.35, C:0.03, G:0.32, T:0.30


Consensus pattern (30 bp):   
AAAGATGATGATATTGATGGTGATTCAAGG
Done.