Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01231.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2962
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32


Found at i:608 original size:21 final size:19

Alignment explanation


    Indices: 571--609  Score: 51
    Period size: 21  Copynumber: 1.9  Consensus size: 19

        561 GCAACTGGTT

                        *      
        571 TCTTTTTCTTGTTTTCTAG
          1 TCTTTTTCTTGTCTTCTAG

                                
        590 TCTTTTTCTTTTGTCTTCTA
          1 TCTTTTTC--TTGTCTTCTA

        610 TGAGGCCTTT


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  19    8  0.47
  21    9  0.53

ACGTcount: A:0.05, C:0.18, G:0.08, T:0.69


Consensus pattern (19 bp):   
TCTTTTTCTTGTCTTCTAG
Done.