Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03114.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1351
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32


Found at i:1151 original size:136 final size:136

Alignment explanation


    Indices: 906--1327  Score: 772
    Period size: 136  Copynumber: 3.1  Consensus size: 136

        896 GAGTATACTC

                                    *                                        
        906 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                              *              
        971 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTTTAGCCCAGTATC
         65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATC

                   
       1036 ACTGTTA
        130 ACTGTTA

                                                                             
       1043 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
       1108 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA

                  
       1173 CTGTTA
        131 CTGTTA

                                                                             
       1179 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                               * *        *  
       1244 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA

                  
       1309 CTGTTA
        131 CTGTTA

              **         
       1315 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1328 AGGCCCAATG


Statistics
Matches: 278,  Mismatches: 7, Indels: 1
        0.97            0.02        0.00

Matches are distributed among these distances:
 136  258  0.93
 137   20  0.07

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA
CTGTTA
Done.