Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03114.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 991

Length: 1653
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31


Found at i:352 original size:26 final size:26

Alignment explanation


    Indices: 315--398  Score: 159
    Period size: 26  Copynumber: 3.2  Consensus size: 26

        305 TGATACAAAT

                   *                  
        315 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        341 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                                      
        367 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATGGGTTAGGTAAATGTTTCA

                  
        393 TGATAA
          1 TGATAA

        399 GAATATCATG


Statistics
Matches: 57,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  26   57  1.00

ACGTcount: A:0.33, C:0.04, G:0.25, T:0.38


Consensus pattern (26 bp):   
TGATAATGGGTTAGGTAAATGTTTCA

Found at i:1453 original size:136 final size:136

Alignment explanation


    Indices: 1208--1629  Score: 772
    Period size: 136  Copynumber: 3.1  Consensus size: 136

       1198 GAGTATACTC

                                    *                                        
       1208 CCCAAATGGGCTTGCATATGTTTACTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC
          1 CCCAAATGGGCTTGCATATG-TTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATAC

                                                              *              
       1273 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGTTTTAGCCCAGTATC
         65 TGTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATC

                   
       1338 ACTGTTA
        130 ACTGTTA

                                                                             
       1345 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                                             
       1410 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA

                  
       1475 CTGTTA
        131 CTGTTA

                                                                             
       1481 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
          1 CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT

                                                               * *        *  
       1546 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTCTGGCCCAGTACCA
         66 GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA

                  
       1611 CTGTTA
        131 CTGTTA

              **         
       1617 CCTGAATGGGCTT
          1 CCCAAATGGGCTT

       1630 AGGCCCAATG


Statistics
Matches: 278,  Mismatches: 7, Indels: 1
        0.97            0.02        0.00

Matches are distributed among these distances:
 136  258  0.93
 137   20  0.07

ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33


Consensus pattern (136 bp):   
CCCAAATGGGCTTGCATATGTTATTGATGTTGCATGTATTTTGAAATGGGCCTATGGGCCATACT
GTTATCTGAATAAGGGGCTAAGGCCCAGTTTATTGTAATCTGAAAAGGGCTTTAGCCCAGTATCA
CTGTTA
Done.