Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03123.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5388
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.30


Found at i:5354 original size:3 final size:3

Alignment explanation


    Indices: 5346--5371  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       5336 ATACACACAA

                                              
       5346 AAT AAT AAT AAT AAT AAT AAT AAT AA
          1 AAT AAT AAT AAT AAT AAT AAT AAT AA

       5372 ACCATAAAAG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31


Consensus pattern (3 bp):   
AAT

Done.