Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03126.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3288
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31


Found at i:3127 original size:22 final size:22

Alignment explanation


    Indices: 3099--3143  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       3089 AGGGGGAGTG

                                  
       3099 TAGGAATATTCTGTAAATATTT
          1 TAGGAATATTCTGTAAATATTT

                      *    *      
       3121 TAGGAATATTTTGTAGATATTT
          1 TAGGAATATTCTGTAAATATTT

             
       3143 T
          1 T

       3144 TTTTATTAAA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.33, C:0.02, G:0.16, T:0.49


Consensus pattern (22 bp):   
TAGGAATATTCTGTAAATATTT
Done.