Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03127.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:93 original size:6 final size:6

Alignment explanation


    Indices: 82--118  Score: 58
    Period size: 6  Copynumber: 6.3  Consensus size: 6

         72 TTGAAACGCT

                                    *                   
         82 TTCTCC TTCTCC TTCTCC TTCCCC TTCTCC TTC-CC TT
          1 TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TTCTCC TT

        119 TATTGTGTCC


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   5    4  0.14
   6   25  0.86

ACGTcount: A:0.00, C:0.51, G:0.00, T:0.49


Consensus pattern (6 bp):   
TTCTCC

Done.