Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03151.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 776

Length: 1294
ACGTcount: A:0.39, C:0.15, G:0.15, T:0.31


Found at i:160 original size:27 final size:28

Alignment explanation


    Indices: 105--163  Score: 82
    Period size: 28  Copynumber: 2.1  Consensus size: 28

         95 ATAACATTTG

                                   *    
        105 AAAAGTTTAGGTACCAAATTAGATAAAA
          1 AAAAGTTTAGGTACCAAATTAGAGAAAA

                     *   *        *     
        133 AAAAGTTTATGTATCAAATTAGGGAAAA
          1 AAAAGTTTAGGTACCAAATTAGAGAAAA

               
        161 AAA
          1 AAA

        164 TGTCAAGTTC


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.54, C:0.05, G:0.15, T:0.25


Consensus pattern (28 bp):   
AAAAGTTTAGGTACCAAATTAGAGAAAA

Found at i:254 original size:29 final size:27

Alignment explanation


    Indices: 212--268  Score: 78
    Period size: 29  Copynumber: 2.0  Consensus size: 27

        202 AAAAAGTATC

                    *                    
        212 AAGTTCAGGTACCAAATTAGGTAAAAAAA
          1 AAGTTCAGATACCAAATTA-G-AAAAAAA

                 *                     
        241 AAGTTTAGATACCAAATTAGAAAAAAA
          1 AAGTTCAGATACCAAATTAGAAAAAAA

             
        268 A
          1 A

        269 TGTCAAGGCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
  27    8  0.31
  28    1  0.04
  29   17  0.65

ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21


Consensus pattern (27 bp):   
AAGTTCAGATACCAAATTAGAAAAAAA
Done.