Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03152.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3680
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.28


Found at i:1004 original size:19 final size:19

Alignment explanation


    Indices: 980--1025  Score: 58
    Period size: 19  Copynumber: 2.4  Consensus size: 19

        970 CTTCCTTTCT

                         *      
        980 TTTGCATT-CATTTCATGCA
          1 TTTGCATTGCATTGCAT-CA

                             * 
        999 TTTGCATTGCATTGCATTA
          1 TTTGCATTGCATTGCATCA

                    
       1018 TTTGCATT
          1 TTTGCATT

       1026 AGACTTTCCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  19   17  0.71
  20    7  0.29

ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50


Consensus pattern (19 bp):   
TTTGCATTGCATTGCATCA
Done.