Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03154.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3231
ACGTcount: A:0.29, C:0.16, G:0.18, T:0.37


Found at i:2456 original size:29 final size:29

Alignment explanation


    Indices: 2422--2481  Score: 120
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2412 TTATGAATGC

                                         
       2422 TTACATGTATGGCAAGCTGTTGTTAGCCT
          1 TTACATGTATGGCAAGCTGTTGTTAGCCT

                                         
       2451 TTACATGTATGGCAAGCTGTTGTTAGCCT
          1 TTACATGTATGGCAAGCTGTTGTTAGCCT

              
       2480 TT
          1 TT

       2482 CTTTCTATTA


Statistics
Matches: 31,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   31  1.00

ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40


Consensus pattern (29 bp):   
TTACATGTATGGCAAGCTGTTGTTAGCCT
Done.