Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga05g03155.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1682
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30


Found at i:833 original size:3 final size:3

Alignment explanation


    Indices: 825--849  Score: 50
    Period size: 3  Copynumber: 8.3  Consensus size: 3

        815 GAGTGGCAAA

                                             
        825 GAT GAT GAT GAT GAT GAT GAT GAT G
          1 GAT GAT GAT GAT GAT GAT GAT GAT G

        850 CCAACTTGCC


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   22  1.00

ACGTcount: A:0.32, C:0.00, G:0.36, T:0.32


Consensus pattern (3 bp):   
GAT

Found at i:1031 original size:3 final size:3

Alignment explanation


    Indices: 1023--1048  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       1013 CATCTCCCAA

                                              
       1023 CAC CAC CAC CAC CAC CAC CAC CAC CA
          1 CAC CAC CAC CAC CAC CAC CAC CAC CA

       1049 TCTCAAACAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.35, C:0.65, G:0.00, T:0.00


Consensus pattern (3 bp):   
CAC

Done.